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ALLMAPS supporting data: Yellow catfish genome assembly

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Version 2 2015-06-07, 21:15
Version 1 2014-06-15, 02:06
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posted on 2015-06-07, 21:15 authored by Haibao TangHaibao Tang

Supporting data for ALLMAPS. The data set includes yellow cat fish de novo genomic scaffolds, a combination of four tGBS maps including two genders and two mapping software JOINMAP and R/QTL - JMFemale, JMMale, BCFemale, BCMale, respectively. ALLMAPS was run to produce pseudomolecules based on these input data. Weighting scheme for ALLMAPS was equal weights (weight=1) for each of the four input maps.

 

Command

python -m jcvi.assembly.allmaps path JM-4.bed scaffolds.fasta

 

Changelog

- 6/7/2015, updated run.sh script

 

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