medicago.zip (109.31 MB)
ALLMAPS supporting data: Medicago genome assembly
Version 2 2015-06-07, 21:09
Version 1 2014-06-15, 01:32
dataset
posted on 2015-06-07, 21:09 authored by Haibao TangHaibao TangSupporting data for ALLMAPS. The data set includes Medicago de novo genomic scaffolds, a combination of three maps including optical map, genetic map and synteny to chickpea. ALLMAPS was run to produce pseudomolecules based on these input data. Weighting scheme for ALLMAPS was optical map (weight=3) > genetic map (weight=2) > synteny (weight=1).
Command
python -m jcvi.assembly.allmaps path Mt.bed scaffolds.fasta --links=40
Changelog
- 6/7/2015, updated run.sh script
