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Published February 3, 2016 | Version v1
Software Open

HSA: Version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure

  • 1. The Jackson Laboractory for Genomic Medicine
  • 2. Univerisity of Connecticut

Description

This upload contains the source code and user manual of HSA, the version used in Zou et al. integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure. HSA is a flexible tool that jointly analyzes multiple contact maps of Hi-C data to infer 3D chromatin structure of the genome. More information can be found at: http://ouyanglab.jax.org/hsa/.

If you use the software, we would be grateful if you cited the following paper:

Zou, C., Zhang, Y., Ouyang, Z. (2016) HSA: integrating multi-track Hi-C data for genome-scale reconstruction of 3D chromatin structure, Genome Biology, 17:40.

Files

HSA.zip

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